Content
Release notes
In Release 22.0 we have updated data from FlyBase to release FB2009_10 and updated several data sets to their most recent versions. In addition we have added GO annotation for protein domains from InterPro and a microRNA widget to list analysis pages which shows enrichment of microRNAs targetting the genes in a list. Please see [...]
In Release 21.0 we have updated data from FlyBase to release FB2009_09 and updated several data sets to their most recent versions. Please see the data section of FlyMine for more details.
Data
NEW – Curated pathways from FlyReactome
WebApp
FIX: Template query name and description no longer disappear when paging through results.
NEW: We’ve added an option to download [...]
In Release 20.0 we have updated data from FlyBase to release FB2009_08 and updated several data sets to their most recent versions. Also we have added pathways from Reactome for fly, yeast and worm. We’ve added a pathway enrichment widget to each gene list analysis page. Please see the pathways section of FlyMine for more [...]
In Release 19.0 we have updated data from FlyBase to release FB2009_07 and many other data sources have been updated to the latest versions. In particular, experimentally determined protein structures for D. melanogaster from PDB have been updated, adding a further 39 known structures.
FlyMine 18.1 contains no new data but fixes several issues with advanced QueryBuilder features and rare export problems. All other functionality remains the same.
The technical details:
QueryBuilder
The Query Overview in the top right pane is now more consistently ordered.
Constraint Logic: queries with multiple sets of OR constraints now work correctly, subsequent OR constraints were being ignored.
Constraint [...]
In Release 18.0 we have updated data from FlyBase to release FB2009_06 and many sources are updated to the latest versions.
Data
Data from FlyBase is updated to the FB2009_06 release and many other sources have been updated to the latest versions, specific changes are detailed below. For a complete list of all data included in FlyMine [...]
In Release 17.0 we have updated data from FlyBase to release FB2009_05 and many sources are updated to the latest versions.
Data
Data from FlyBase is updated to the FB2009_05 release and many other sources have been updated to the latest versions, specific changes are detailed below. For a complete list of all data included in FlyMine [...]
In Release 16.0 we have updated data from FlyBase to release FB2009_04 and many sources are updated to the latest versions, the way we include proteins has been redesigned so that all isoforms from UniProt are loaded. We have introduced a significant new feature to querying (’outer joins’) and improved general query and export performance.
Data
Data [...]
In Release 15.0 we have updated data from FlyBase to release FB2008_08 and many sources are updated to the latest versions.
Data
Data from FlyBase is updated to the FB2008_08 release and many other sources have been updated to the latest versions, specific changes are detailed below. For a complete list of all data included in FlyMine [...]
In Release 14.0 we have updated data from FlyBase to release FB2008_06 and many sources are updated to the latest versions. We have added an autocompletion feature for many constraints in template queries and QueryBuilder. This means that as you type, for example a GO term or protein domain name, suggested matches will be provided.
Data
Data [...]
